PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008777.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family CAMTA
Protein Properties Length: 911aa    MW: 102140 Da    PI: 8.6906
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008777.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1164.41.9e-51331474117
        CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101
                 e  +rw +++ei+a+L+n++++++++++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK+g+ e +++yYa++e++p+f rrcywl
  Do008777.1  33 EaGTRWFRPNEIYAVLANHARFRIHAQPIDKPMSGTVVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEEKVHVYYARGEDDPNFFRRCYWL 131
                 4379*********************************************************************************************** PP

        CG-1 102 Leeelekivlvhylev 117
                 L++ele+ivlvhy+++
  Do008777.1 132 LDKELERIVLVHYRQT 147
                 *************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143772.78927153IPR005559CG-1 DNA-binding domain
SMARTSM010768.2E-6230148IPR005559CG-1 DNA-binding domain
PfamPF038592.6E-4434146IPR005559CG-1 DNA-binding domain
SuperFamilySSF812963.08E-10378464IPR014756Immunoglobulin E-set
CDDcd002041.25E-16555663No hitNo description
SuperFamilySSF484034.2E-17561669IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.5E-18562670IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.484571675IPR020683Ankyrin repeat-containing domain
PfamPF127963.4E-8577667IPR020683Ankyrin repeat-containing domain
SMARTSM002486.7E-6604633IPR002110Ankyrin repeat
PROSITE profilePS5008811.888604636IPR002110Ankyrin repeat
SMARTSM00248520643672IPR002110Ankyrin repeat
SuperFamilySSF525404.51E-9756820IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.24769791IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.334770799IPR000048IQ motif, EF-hand binding site
PfamPF006120.0057772790IPR000048IQ motif, EF-hand binding site
SMARTSM000150.004792814IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.493793817IPR000048IQ motif, EF-hand binding site
PfamPF006126.1E-4794814IPR000048IQ motif, EF-hand binding site
SMARTSM000157.3873895IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.249875903IPR000048IQ motif, EF-hand binding site
PfamPF006120.12876895IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 911 aa     Download sequence    Send to blast
MAAGAGSRDP LVASEIHGFL TCADLNYDKL MAEAGTRWFR PNEIYAVLAN HARFRIHAQP  60
IDKPMSGTVV LYDRKVVRNF RKDGHNWKKK KDGKTVQEAH EKLKIGNEEK VHVYYARGED  120
DPNFFRRCYW LLDKELERIV LVHYRQTSEE NAIPPPHIEA EVAEVPPINV IHYTSPQTST  180
DSASARTELS CAAAAPEEIN SHGGGAISCE TDDHDSSLES FWADLLESSM KNDTSVRGGS  240
LTPNQQTNNG MRDSGNNVFN TNATSNAIFS SPANVVSEAY ATNPGLNQVS ESYYGALKHL  300
VNQSPSLLTS DLDSQSKQLA SSLTKTPVNG SMPSDVPDRQ NSLGLWKYLD DDITCLGDNP  360
SSAIPTTRPM IDEIPFHIIE ISSEWAYCTE DTKVLVVGYF HDNYKHLAGT NLFCIIGDQC  420
VTADIVQTGV YRFMARPHVP GRVNLYLTLD GKTPISNVLS FDYREIPGSS DEDEPKKSKL  480
QMQMRLARLL FSTSKKKVAP KLLVEGSKVS NLLSASTDKE WMDLFKYVTD SKGTYIPATE  540
GLLELVLRNR LQEWLVEKII EGHKSTERDD LGQGPIHLCS FLGYTWAIRL FSLSGFSLDF  600
RDSSGWTALH WAASYGREKM VAALLSAGAN PSLVTDPTHD APGGHTAADL AARQGFDGLA  660
AYLAEKGLTA HFEAMSLSKD KRSASRTQSI KQLSKEFENL SEQELCLRES LAAYRNAADA  720
ASNIQAALRE RTLKLQTKAI QLANPELEAS AIVAAMRIQH AFRNYNRKKM MRAAARIQSH  780
FRTWQMRRNF MNMRRQAIKI QAVYRGHQVR RQYRKVIWSV GVVEKAILRW RKKRKGLRGI  840
ATGMPVAMAT DVEAASTAEE DYYQVGRQQA EDRFNRSVVR VQALFRSHRA QQEYRRMKVA  900
HEEAKVEFSQ K
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0879100.0BT087910.1 Zea mays full-length cDNA clone ZM_BFb0305J11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957727.10.0PREDICTED: calmodulin-binding transcription activator 6-like
TrEMBLK3ZQI20.0K3ZQI2_SETIT; Uncharacterized protein
STRINGSi028862m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators